Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim3Q9R1R2 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm3928-201ENSMUST00000121141 1307 ntBASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm12350-201ENSMUST00000121208 462 ntBASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm15173-201ENSMUST00000122049 433 ntBASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim3Q9R1R2 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Gm8344-201ENSMUST00000119813 856 ntBASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Mir5126-201ENSMUST00000175513 77 ntBASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Gm6550-201ENSMUST00000187574 993 ntBASIC14.21□□□□□ -0.13
Trim3Q9R1R2 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim3Q9R1R2 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim3Q9R1R2 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.2□□□□□ -0.14
Trim3Q9R1R2 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Gm27646-201ENSMUST00000183989 110 ntBASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms