Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim54Q9ERP3 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 CT030684.1-201ENSMUST00000227292 914 ntBASIC16.34■□□□□ 0.21
Trim54Q9ERP3 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim54Q9ERP3 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim54Q9ERP3 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Trim54Q9ERP3 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Trim54Q9ERP3 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
Trim54Q9ERP3 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Trim54Q9ERP3 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim54Q9ERP3 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.33■□□□□ 0.21
Trim54Q9ERP3 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Mir449b-201ENSMUST00000104833 80 ntBASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim54Q9ERP3 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trim54Q9ERP3 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Gm7774-201ENSMUST00000200064 533 ntBASIC16.31■□□□□ 0.2
Trim54Q9ERP3 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.31■□□□□ 0.2
Trim54Q9ERP3 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim54Q9ERP3 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms