Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm44454-201ENSMUST00000198541 138 ntBASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx28Q9CWT6 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx28Q9CWT6 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx28Q9CWT6 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 84.1 ms