Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Gm38042-201ENSMUST00000191614 5208 ntBASIC16.93■□□□□ 0.3
Smc1aQ9CU62 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm10710-201ENSMUST00000047876 3971 ntBASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm25406-201ENSMUST00000157599 105 ntBASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm9727-201ENSMUST00000161387 555 ntBASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm27628-201ENSMUST00000184911 107 ntBASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm36967-201ENSMUST00000193814 266 ntBASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.92■□□□□ 0.3
Smc1aQ9CU62 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Smc1aQ9CU62 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Smc1aQ9CU62 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Gm24513-201ENSMUST00000174964 138 ntBASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Smc1aQ9CU62 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Smc1aQ9CU62 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Smc1aQ9CU62 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Smc1aQ9CU62 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms