Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Gm12350-201ENSMUST00000121208 462 ntBASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC15.34■□□□□ 0.05
Sh3rf1Q69ZI1 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Sh3rf1Q69ZI1 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Sh3rf1Q69ZI1 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Sh3rf1Q69ZI1 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.33■□□□□ 0.05
Sh3rf1Q69ZI1 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Sh3rf1Q69ZI1 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Sh3rf1Q69ZI1 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Gm15173-201ENSMUST00000122049 433 ntBASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Gm6257-201ENSMUST00000163864 910 ntBASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Gm37935-201ENSMUST00000192012 982 ntBASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Rbfox2-207ENSMUST00000227533 1041 ntBASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sh3rf1Q69ZI1 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Gm13418-201ENSMUST00000119097 944 ntBASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Gm7507-201ENSMUST00000183053 1008 ntBASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Gm5364-201ENSMUST00000216789 889 ntBASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sh3rf1Q69ZI1 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms