Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
Usp28Q5I043 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Usp28Q5I043 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Usp28Q5I043 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC17.17■□□□□ 0.34
Usp28Q5I043 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
Usp28Q5I043 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.17■□□□□ 0.34
Usp28Q5I043 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.17■□□□□ 0.34
Usp28Q5I043 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usp28Q5I043 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Gm10313-201ENSMUST00000095320 1002 ntBASIC17.16■□□□□ 0.34
Usp28Q5I043 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Usp28Q5I043 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp28Q5I043 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Usp28Q5I043 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Usp28Q5I043 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Usp28Q5I043 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Usp28Q5I043 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.15■□□□□ 0.34
Usp28Q5I043 Gm34391-201ENSMUST00000203706 907 ntBASIC17.15■□□□□ 0.34
Usp28Q5I043 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.15■□□□□ 0.34
Usp28Q5I043 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.15■□□□□ 0.34
Usp28Q5I043 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC17.15■□□□□ 0.34
Usp28Q5I043 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Usp28Q5I043 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp28Q5I043 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Usp28Q5I043 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.14■□□□□ 0.33
Usp28Q5I043 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.14■□□□□ 0.33
Usp28Q5I043 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC17.14■□□□□ 0.33
Usp28Q5I043 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms