Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim40Q3UWA4 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim40Q3UWA4 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Trim40Q3UWA4 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Gm23547-201ENSMUST00000158210 271 ntBASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim40Q3UWA4 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim40Q3UWA4 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Gm6433-201ENSMUST00000118634 875 ntBASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Gm15565-201ENSMUST00000118890 427 ntBASIC14.18□□□□□ -0.14
Trim40Q3UWA4 AC153881.2-201ENSMUST00000214877 204 ntBASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim40Q3UWA4 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms