Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Gm21854-201ENSMUST00000179901 471 ntBASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Gm28760-201ENSMUST00000185995 736 ntBASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Gm38319-201ENSMUST00000194537 1266 ntBASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Gm9797-201ENSMUST00000052902 613 ntBASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddb1Q3U1J4 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Gm15806-201ENSMUST00000120696 955 ntBASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Gm31326-201ENSMUST00000191856 1048 ntBASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 AC154687.2-201ENSMUST00000223853 640 ntBASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddb1Q3U1J4 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Mir6392-201ENSMUST00000184924 108 ntBASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Gm9229-201ENSMUST00000222777 126 ntBASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddb1Q3U1J4 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 AY702102-202ENSMUST00000194651 1173 ntBASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 AC149588.3-201ENSMUST00000227515 150 ntBASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddb1Q3U1J4 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms