Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col28a1Q2UY11 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col28a1Q2UY11 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Gm14780-201ENSMUST00000118387 2737 ntBASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Gm18733-201ENSMUST00000173950 856 ntBASIC14.66□□□□□ -0.06
Col28a1Q2UY11 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC14.66□□□□□ -0.06
Col28a1Q2UY11 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms