Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-1P50220 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Gm45546-201ENSMUST00000211053 2394 ntBASIC12.55□□□□□ -0.4
Nkx2-1P50220 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-1P50220 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Gm10231-201ENSMUST00000181584 441 ntBASIC12.54□□□□□ -0.4
Nkx2-1P50220 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Gm10175-202ENSMUST00000208752 441 ntBASIC12.54□□□□□ -0.4
Nkx2-1P50220 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx2-1P50220 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx2-1P50220 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx2-1P50220 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms