Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.33□□□□□ -0.12
Lire1P11260 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.33□□□□□ -0.12
Lire1P11260 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14.33□□□□□ -0.12
Lire1P11260 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.33□□□□□ -0.12
Lire1P11260 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
Lire1P11260 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC14.33□□□□□ -0.12
Lire1P11260 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC14.33□□□□□ -0.12
Lire1P11260 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.33□□□□□ -0.12
Lire1P11260 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.33□□□□□ -0.12
Lire1P11260 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
Lire1P11260 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Lire1P11260 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Lire1P11260 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.32□□□□□ -0.12
Lire1P11260 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC14.32□□□□□ -0.12
Lire1P11260 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.32□□□□□ -0.12
Lire1P11260 Gm10060-201ENSMUST00000212002 111 ntBASIC14.32□□□□□ -0.12
Lire1P11260 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.32□□□□□ -0.12
Lire1P11260 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Lire1P11260 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Lire1P11260 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Lire1P11260 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.32□□□□□ -0.12
Lire1P11260 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lire1P11260 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Lire1P11260 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.31□□□□□ -0.12
Lire1P11260 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Lire1P11260 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Lire1P11260 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lire1P11260 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Lire1P11260 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lire1P11260 Gm38273-201ENSMUST00000194987 2382 ntBASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms