Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col4a6B1AVK5 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col4a6B1AVK5 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col4a6B1AVK5 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Gm8749-201ENSMUST00000117737 331 ntBASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Gm28760-201ENSMUST00000185995 736 ntBASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Gm31326-201ENSMUST00000191856 1048 ntBASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a6B1AVK5 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a6B1AVK5 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Gm9726-201ENSMUST00000180321 678 ntBASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 AA619741-201ENSMUST00000195095 646 ntBASIC15.31■□□□□ 0.04
Col4a6B1AVK5 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 AC238811.3-201ENSMUST00000225422 709 ntBASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Ccdc166-201ENSMUST00000182172 2584 ntBASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a6B1AVK5 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a6B1AVK5 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms