Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Gm16425-201ENSMUST00000118143 3130 ntBASIC14.77□□□□□ -0.05
Msh4Q99MT2 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.77□□□□□ -0.05
Msh4Q99MT2 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.76□□□□□ -0.05
Msh4Q99MT2 Gm18206-201ENSMUST00000207027 926 ntBASIC14.76□□□□□ -0.05
Msh4Q99MT2 Gm15590-201ENSMUST00000078419 552 ntBASIC14.76□□□□□ -0.05
Msh4Q99MT2 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Msh4Q99MT2 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.76□□□□□ -0.05
Msh4Q99MT2 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Msh4Q99MT2 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Gm14026-201ENSMUST00000120625 1789 ntBASIC14.75□□□□□ -0.05
Msh4Q99MT2 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Msh4Q99MT2 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gm1401-201ENSMUST00000122048 772 ntBASIC14.74□□□□□ -0.05
Msh4Q99MT2 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.74□□□□□ -0.05
Msh4Q99MT2 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Msh4Q99MT2 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Msh4Q99MT2 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Msh4Q99MT2 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Msh4Q99MT2 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Msh4Q99MT2 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Msh4Q99MT2 Gm43598-201ENSMUST00000202482 2479 ntBASIC14.73□□□□□ -0.05
Msh4Q99MT2 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Msh4Q99MT2 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Msh4Q99MT2 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms