Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx54Q8K4L0 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx54Q8K4L0 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC19.69■□□□□ 0.74
Ddx54Q8K4L0 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx54Q8K4L0 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Ddx54Q8K4L0 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx54Q8K4L0 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Ddx54Q8K4L0 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC19.68■□□□□ 0.74
Ddx54Q8K4L0 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Gm12957-201ENSMUST00000117835 377 ntBASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Gm21854-201ENSMUST00000179901 471 ntBASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Ddx54Q8K4L0 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 AC164567.1-201ENSMUST00000219185 960 ntBASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx54Q8K4L0 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 CT030657.3-201ENSMUST00000222707 1200 ntBASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 CT009510.1-201ENSMUST00000227972 270 ntBASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx54Q8K4L0 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
Ddx54Q8K4L0 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx54Q8K4L0 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx54Q8K4L0 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx54Q8K4L0 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx54Q8K4L0 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC19.64■□□□□ 0.73
Ddx54Q8K4L0 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx54Q8K4L0 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx54Q8K4L0 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC19.64■□□□□ 0.73
Ddx54Q8K4L0 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC19.64■□□□□ 0.73
Ddx54Q8K4L0 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms