Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Vps53Q8CCB4 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps53Q8CCB4 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Gm11764-201ENSMUST00000120221 623 ntBASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps53Q8CCB4 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
Vps53Q8CCB4 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vps53Q8CCB4 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
Vps53Q8CCB4 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vps53Q8CCB4 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vps53Q8CCB4 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
Vps53Q8CCB4 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Gm10576-201ENSMUST00000191927 825 ntBASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps53Q8CCB4 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Vps53Q8CCB4 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms