Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.94□□□□□ -0.02
Ubp1Q811S7 Gm18206-201ENSMUST00000207027 926 ntBASIC14.94□□□□□ -0.02
Ubp1Q811S7 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.94□□□□□ -0.02
Ubp1Q811S7 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ubp1Q811S7 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.93□□□□□ -0.02
Ubp1Q811S7 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.93□□□□□ -0.02
Ubp1Q811S7 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.93□□□□□ -0.02
Ubp1Q811S7 Gm42670-201ENSMUST00000201816 1292 ntBASIC14.93□□□□□ -0.02
Ubp1Q811S7 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Gm5364-201ENSMUST00000216789 889 ntBASIC14.93□□□□□ -0.02
Ubp1Q811S7 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.93□□□□□ -0.02
Ubp1Q811S7 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ubp1Q811S7 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.92□□□□□ -0.02
Ubp1Q811S7 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 AW822252-206ENSMUST00000208904 237 ntBASIC14.92□□□□□ -0.02
Ubp1Q811S7 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.92□□□□□ -0.02
Ubp1Q811S7 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ubp1Q811S7 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ubp1Q811S7 Gm43352-201ENSMUST00000196419 3065 ntBASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms