Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Gm13233-201ENSMUST00000118760 1443 ntBASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Gm13244-201ENSMUST00000118855 1446 ntBASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Auts2-212ENSMUST00000178555 309 ntBASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Mir6956-201ENSMUST00000183598 62 ntBASIC18.67■□□□□ 0.58
Ddx58Q6Q899 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Gm14026-201ENSMUST00000120625 1789 ntBASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx58Q6Q899 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Mir449b-201ENSMUST00000104833 80 ntBASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Gm2810-201ENSMUST00000118681 990 ntBASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Gm15483-201ENSMUST00000120338 456 ntBASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx58Q6Q899 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Gm25948-201ENSMUST00000175334 112 ntBASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Fgf17-202ENSMUST00000227123 1336 ntBASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ddx58Q6Q899 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms