Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gm14026-201ENSMUST00000120625 1789 ntBASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Upf3aQ3ULJ3 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Arhgef33-209ENSMUST00000225223 714 ntBASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Wdyhv1-203ENSMUST00000226889 394 ntBASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Upf3aQ3ULJ3 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 AC153526.5-201ENSMUST00000218661 2147 ntBASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Gm23547-201ENSMUST00000158210 271 ntBASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Mir8102-201ENSMUST00000184148 139 ntBASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Gm27989-201ENSMUST00000184721 107 ntBASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Gm28630-201ENSMUST00000187806 498 ntBASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Upf3aQ3ULJ3 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 AC131743.5-201ENSMUST00000220775 1618 ntBASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Gm8410-201ENSMUST00000117225 605 ntBASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Gm25144-201ENSMUST00000179561 110 ntBASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Gm25352-201ENSMUST00000179815 110 ntBASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Gm6888-201ENSMUST00000221983 706 ntBASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Upf3aQ3ULJ3 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.86■□□□□ 0.13
Upf3aQ3ULJ3 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms