Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.84■□□□□ 0.45
Limch1Q3UH68 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.83■□□□□ 0.45
Limch1Q3UH68 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Limch1Q3UH68 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Gm27397-201ENSMUST00000184997 107 ntBASIC17.83■□□□□ 0.44
Limch1Q3UH68 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.83■□□□□ 0.44
Limch1Q3UH68 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.83■□□□□ 0.44
Limch1Q3UH68 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
Limch1Q3UH68 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 AC174678.1-201ENSMUST00000228007 2749 ntBASIC17.82■□□□□ 0.44
Limch1Q3UH68 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Limch1Q3UH68 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Gm8318-201ENSMUST00000182954 872 ntBASIC17.81■□□□□ 0.44
Limch1Q3UH68 Gm27646-201ENSMUST00000183989 110 ntBASIC17.81■□□□□ 0.44
Limch1Q3UH68 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Limch1Q3UH68 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Gm14822-201ENSMUST00000122247 291 ntBASIC17.8■□□□□ 0.44
Limch1Q3UH68 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC17.8■□□□□ 0.44
Limch1Q3UH68 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.8■□□□□ 0.44
Limch1Q3UH68 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Limch1Q3UH68 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Limch1Q3UH68 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms