Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col28a1Q2UY11 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Gm11452-201ENSMUST00000122376 690 ntBASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col28a1Q2UY11 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.71□□□□□ -0.06
Col28a1Q2UY11 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col28a1Q2UY11 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col28a1Q2UY11 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col28a1Q2UY11 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
Col28a1Q2UY11 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col28a1Q2UY11 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col28a1Q2UY11 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Gm25925-201ENSMUST00000158314 306 ntBASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.69□□□□□ -0.06
Col28a1Q2UY11 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms