Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC12.46□□□□□ -0.41
Sdc1P18828 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC12.46□□□□□ -0.41
Sdc1P18828 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
Sdc1P18828 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC12.46□□□□□ -0.41
Sdc1P18828 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Sdc1P18828 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC12.46□□□□□ -0.41
Sdc1P18828 Gm27405-201ENSMUST00000184201 112 ntBASIC12.46□□□□□ -0.41
Sdc1P18828 Gm44878-201ENSMUST00000205812 1295 ntBASIC12.46□□□□□ -0.41
Sdc1P18828 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.41
Sdc1P18828 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sdc1P18828 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sdc1P18828 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sdc1P18828 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sdc1P18828 Ksr1-207ENSMUST00000226282 5260 ntBASIC12.46□□□□□ -0.42
Sdc1P18828 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sdc1P18828 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.42
Sdc1P18828 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Sdc1P18828 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Sdc1P18828 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sdc1P18828 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Sdc1P18828 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Sdc1P18828 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC12.45□□□□□ -0.42
Sdc1P18828 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Gm5874-201ENSMUST00000096101 508 ntBASIC12.45□□□□□ -0.42
Sdc1P18828 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Sdc1P18828 Prkcz2-201ENSMUST00000206136 1756 ntBASIC12.45□□□□□ -0.42
Sdc1P18828 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Sdc1P18828 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC12.45□□□□□ -0.42
Sdc1P18828 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC12.45□□□□□ -0.42
Sdc1P18828 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc1P18828 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Gm11539-201ENSMUST00000119837 557 ntBASIC12.44□□□□□ -0.42
Sdc1P18828 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC12.44□□□□□ -0.42
Sdc1P18828 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC12.44□□□□□ -0.42
Sdc1P18828 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC12.44□□□□□ -0.42
Sdc1P18828 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC12.44□□□□□ -0.42
Sdc1P18828 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC12.44□□□□□ -0.42
Sdc1P18828 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sdc1P18828 Gm38197-201ENSMUST00000192320 2122 ntBASIC12.44□□□□□ -0.42
Sdc1P18828 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sdc1P18828 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms