Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
Lmx1bO88609 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lmx1bO88609 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lmx1bO88609 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lmx1bO88609 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lmx1bO88609 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lmx1bO88609 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lmx1bO88609 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.73□□□□□ -0.21
Lmx1bO88609 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC13.73□□□□□ -0.21
Lmx1bO88609 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC13.73□□□□□ -0.21
Lmx1bO88609 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.73□□□□□ -0.21
Lmx1bO88609 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.73□□□□□ -0.21
Lmx1bO88609 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.73□□□□□ -0.21
Lmx1bO88609 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Gm13337-201ENSMUST00000119183 1594 ntBASIC13.73□□□□□ -0.21
Lmx1bO88609 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
Lmx1bO88609 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lmx1bO88609 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gm13294-201ENSMUST00000121757 1330 ntBASIC13.72□□□□□ -0.21
Lmx1bO88609 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.72□□□□□ -0.21
Lmx1bO88609 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gm18246-201ENSMUST00000221023 728 ntBASIC13.72□□□□□ -0.21
Lmx1bO88609 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC13.72□□□□□ -0.21
Lmx1bO88609 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Gm5184-201ENSMUST00000220417 1702 ntBASIC13.72□□□□□ -0.21
Lmx1bO88609 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lmx1bO88609 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC13.71□□□□□ -0.21
Lmx1bO88609 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC13.71□□□□□ -0.21
Lmx1bO88609 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
Lmx1bO88609 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
Lmx1bO88609 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC13.71□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms