Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Hmgb3O54879 Gm13034-201ENSMUST00000121342 3177 ntBASIC12.58□□□□□ -0.4
Hmgb3O54879 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Hmgb3O54879 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC12.57□□□□□ -0.4
Hmgb3O54879 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hmgb3O54879 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Gm7213-201ENSMUST00000215977 950 ntBASIC12.56□□□□□ -0.4
Hmgb3O54879 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Gm37912-201ENSMUST00000191895 3076 ntBASIC12.56□□□□□ -0.4
Hmgb3O54879 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Spsb2-203ENSMUST00000112473 1322 ntBASIC12.56□□□□□ -0.4
Hmgb3O54879 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Hmgb3O54879 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hmgb3O54879 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Hmgb3O54879 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Gm715-201ENSMUST00000117865 831 ntBASIC12.55□□□□□ -0.4
Hmgb3O54879 AC154649.1-201ENSMUST00000227392 384 ntBASIC12.55□□□□□ -0.4
Hmgb3O54879 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Hmgb3O54879 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Hmgb3O54879 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms