Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cpsf3Q9QXK7 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Thap2-203ENSMUST00000218989 527 ntBASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 Asic1-205ENSMUST00000228185 1818 ntBASIC16.29■□□□□ 0.2
Cpsf3Q9QXK7 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Celf4-206ENSMUST00000224553 1729 ntBASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Gm11839-201ENSMUST00000120647 1953 ntBASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Gm2272-201ENSMUST00000194903 582 ntBASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.28■□□□□ 0.2
Cpsf3Q9QXK7 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Gm16198-201ENSMUST00000118766 670 ntBASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Gm37935-201ENSMUST00000192012 982 ntBASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cpsf3Q9QXK7 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cpsf3Q9QXK7 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms