Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.02■□□□□ -0
Lima1Q9ERG0 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Lima1Q9ERG0 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Lima1Q9ERG0 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC15.02■□□□□ -0
Lima1Q9ERG0 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC15.02■□□□□ -0
Lima1Q9ERG0 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC15.02■□□□□ -0
Lima1Q9ERG0 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC15.02■□□□□ -0
Lima1Q9ERG0 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lima1Q9ERG0 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Gm5049-201ENSMUST00000195878 1590 ntBASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lima1Q9ERG0 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Gm7284-201ENSMUST00000131667 944 ntBASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Gm1818-201ENSMUST00000169406 1184 ntBASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Mir3081-201ENSMUST00000175305 84 ntBASIC15.01□□□□□ -0.01
Lima1Q9ERG0 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Prkcz2-201ENSMUST00000206136 1756 ntBASIC15.01□□□□□ -0.01
Lima1Q9ERG0 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lima1Q9ERG0 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15□□□□□ -0.01
Lima1Q9ERG0 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
Lima1Q9ERG0 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lima1Q9ERG0 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Lima1Q9ERG0 Gm14780-201ENSMUST00000118387 2737 ntBASIC15□□□□□ -0.01
Lima1Q9ERG0 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lima1Q9ERG0 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms