Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 AC166341.4-201ENSMUST00000220625 123 ntBASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Gm8096-201ENSMUST00000209921 1591 ntBASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.71■□□□□ 0.59
Ddx58Q6Q899 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 AC139382.1-201ENSMUST00000221402 498 ntBASIC18.7■□□□□ 0.58
Ddx58Q6Q899 AC131187.1-201ENSMUST00000224567 809 ntBASIC18.7■□□□□ 0.58
Ddx58Q6Q899 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx58Q6Q899 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm22065-201ENSMUST00000103753 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm22066-201ENSMUST00000103761 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24932-201ENSMUST00000103763 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24115-201ENSMUST00000103799 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm22190-201ENSMUST00000103827 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm22191-201ENSMUST00000103831 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm25287-201ENSMUST00000103846 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24721-201ENSMUST00000103849 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm22918-201ENSMUST00000103855 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm28018-201ENSMUST00000103869 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm26399-201ENSMUST00000103937 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm11543-201ENSMUST00000120758 370 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm18737-201ENSMUST00000173594 937 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm25349-201ENSMUST00000177728 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm23616-201ENSMUST00000177797 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm25871-201ENSMUST00000177816 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24752-201ENSMUST00000178240 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24496-201ENSMUST00000178287 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm25649-201ENSMUST00000178476 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm25548-201ENSMUST00000178681 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm23147-201ENSMUST00000178841 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm26095-201ENSMUST00000179270 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm22171-201ENSMUST00000179283 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm23936-201ENSMUST00000179354 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm22619-201ENSMUST00000179516 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm25255-201ENSMUST00000179579 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24755-201ENSMUST00000179691 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm26506-201ENSMUST00000179692 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm25086-201ENSMUST00000179931 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm23243-201ENSMUST00000180047 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24659-201ENSMUST00000180212 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm24169-201ENSMUST00000180244 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm23689-201ENSMUST00000180354 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm27359-201ENSMUST00000184153 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm27785-201ENSMUST00000184268 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm27466-201ENSMUST00000184396 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm27703-201ENSMUST00000184836 110 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm44872-201ENSMUST00000207864 420 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 AC131710.1-201ENSMUST00000228336 990 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 AC131743.5-201ENSMUST00000220775 1618 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.69■□□□□ 0.58
Ddx58Q6Q899 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx58Q6Q899 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms