Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Sdc1P18828 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC12.49□□□□□ -0.41
Sdc1P18828 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Gm45779-201ENSMUST00000212189 4064 ntBASIC12.49□□□□□ -0.41
Sdc1P18828 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC12.49□□□□□ -0.41
Sdc1P18828 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Sdc1P18828 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Sdc1P18828 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sdc1P18828 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sdc1P18828 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 AC166491.1-201ENSMUST00000227053 2308 ntBASIC12.48□□□□□ -0.41
Sdc1P18828 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sdc1P18828 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sdc1P18828 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Sdc1P18828 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sdc1P18828 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC12.48□□□□□ -0.41
Sdc1P18828 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sdc1P18828 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC12.47□□□□□ -0.41
Sdc1P18828 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC12.47□□□□□ -0.41
Sdc1P18828 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Gm12008-201ENSMUST00000117791 755 ntBASIC12.47□□□□□ -0.41
Sdc1P18828 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 H2-K2-201ENSMUST00000174250 1049 ntBASIC12.47□□□□□ -0.41
Sdc1P18828 Gm18666-201ENSMUST00000190039 958 ntBASIC12.47□□□□□ -0.41
Sdc1P18828 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
Sdc1P18828 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sdc1P18828 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sdc1P18828 Gm28182-201ENSMUST00000188354 2477 ntBASIC12.47□□□□□ -0.41
Sdc1P18828 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms