Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Lig4Q8BTF7 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Lig4Q8BTF7 AC151971.4-201ENSMUST00000214717 704 ntBASIC23.91■■□□□ 1.42
Lig4Q8BTF7 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC23.91■■□□□ 1.42
Lig4Q8BTF7 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Lig4Q8BTF7 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Lig4Q8BTF7 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Lig4Q8BTF7 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Lig4Q8BTF7 Gm14523-201ENSMUST00000117260 558 ntBASIC23.89■■□□□ 1.41
Lig4Q8BTF7 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Lig4Q8BTF7 Gm44428-201ENSMUST00000204474 874 ntBASIC23.89■■□□□ 1.41
Lig4Q8BTF7 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Lig4Q8BTF7 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Lig4Q8BTF7 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Lig4Q8BTF7 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Lig4Q8BTF7 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Gm7332-201ENSMUST00000118351 454 ntBASIC23.87■■□□□ 1.41
Lig4Q8BTF7 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Lig4Q8BTF7 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Lig4Q8BTF7 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Lig4Q8BTF7 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Lig4Q8BTF7 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Lig4Q8BTF7 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC23.85■■□□□ 1.41
Lig4Q8BTF7 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Lig4Q8BTF7 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Lig4Q8BTF7 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC23.84■■□□□ 1.41
Lig4Q8BTF7 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Lig4Q8BTF7 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC23.83■■□□□ 1.41
Lig4Q8BTF7 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC23.83■■□□□ 1.4
Lig4Q8BTF7 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Lig4Q8BTF7 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.82■■□□□ 1.4
Lig4Q8BTF7 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Lig4Q8BTF7 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
Lig4Q8BTF7 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC23.81■■□□□ 1.4
Lig4Q8BTF7 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC23.81■■□□□ 1.4
Lig4Q8BTF7 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Lig4Q8BTF7 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.8■■□□□ 1.4
Lig4Q8BTF7 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Lig4Q8BTF7 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Lig4Q8BTF7 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Lig4Q8BTF7 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Lig4Q8BTF7 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.78■■□□□ 1.4
Lig4Q8BTF7 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC23.78■■□□□ 1.4
Lig4Q8BTF7 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
Lig4Q8BTF7 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.78■■□□□ 1.4
Lig4Q8BTF7 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Lig4Q8BTF7 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Lig4Q8BTF7 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC23.77■■□□□ 1.4
Lig4Q8BTF7 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Lig4Q8BTF7 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Lig4Q8BTF7 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Lig4Q8BTF7 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Lig4Q8BTF7 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
Lig4Q8BTF7 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Lig4Q8BTF7 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Lig4Q8BTF7 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.75■■□□□ 1.39
Lig4Q8BTF7 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Lig4Q8BTF7 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Lig4Q8BTF7 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Lig4Q8BTF7 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Lig4Q8BTF7 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Lig4Q8BTF7 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Lig4Q8BTF7 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
Lig4Q8BTF7 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.73■■□□□ 1.39
Lig4Q8BTF7 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Lig4Q8BTF7 AC164433.2-201ENSMUST00000226346 1701 ntBASIC23.73■■□□□ 1.39
Lig4Q8BTF7 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Lig4Q8BTF7 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Lig4Q8BTF7 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Lig4Q8BTF7 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Lig4Q8BTF7 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
Lig4Q8BTF7 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Lig4Q8BTF7 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC23.71■■□□□ 1.39
Lig4Q8BTF7 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Lig4Q8BTF7 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Lig4Q8BTF7 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.7■■□□□ 1.38
Lig4Q8BTF7 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Lig4Q8BTF7 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Lig4Q8BTF7 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Lig4Q8BTF7 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Lig4Q8BTF7 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Lig4Q8BTF7 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Lig4Q8BTF7 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
Lig4Q8BTF7 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC23.69■■□□□ 1.38
Lig4Q8BTF7 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Lig4Q8BTF7 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Lig4Q8BTF7 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Lig4Q8BTF7 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Lig4Q8BTF7 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.68■■□□□ 1.38
Lig4Q8BTF7 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Lig4Q8BTF7 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Lig4Q8BTF7 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Lig4Q8BTF7 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms