Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC25.12■■□□□ 1.61
Smarca1Q6PGB8 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Smarca1Q6PGB8 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Smarca1Q6PGB8 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Smarca1Q6PGB8 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Smarca1Q6PGB8 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
Smarca1Q6PGB8 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Smarca1Q6PGB8 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Smarca1Q6PGB8 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Smarca1Q6PGB8 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC25.09■■□□□ 1.61
Smarca1Q6PGB8 AC122317.2-201ENSMUST00000218708 1248 ntBASIC25.08■■□□□ 1.61
Smarca1Q6PGB8 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Smarca1Q6PGB8 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Smarca1Q6PGB8 Gm16437-201ENSMUST00000025669 507 ntBASIC25.07■■□□□ 1.6
Smarca1Q6PGB8 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Smarca1Q6PGB8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Smarca1Q6PGB8 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Smarca1Q6PGB8 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC25.05■■□□□ 1.6
Smarca1Q6PGB8 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Smarca1Q6PGB8 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC25.05■■□□□ 1.6
Smarca1Q6PGB8 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC25.05■■□□□ 1.6
Smarca1Q6PGB8 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Smarca1Q6PGB8 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Smarca1Q6PGB8 Cap2-205ENSMUST00000225824 1634 ntBASIC25.04■■□□□ 1.6
Smarca1Q6PGB8 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Smarca1Q6PGB8 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Smarca1Q6PGB8 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Smarca1Q6PGB8 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Smarca1Q6PGB8 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Smarca1Q6PGB8 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC25.02■■□□□ 1.6
Smarca1Q6PGB8 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Smarca1Q6PGB8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
Smarca1Q6PGB8 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Smarca1Q6PGB8 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.6
Smarca1Q6PGB8 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Smarca1Q6PGB8 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC25.01■■□□□ 1.59
Smarca1Q6PGB8 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC25.01■■□□□ 1.59
Smarca1Q6PGB8 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Smarca1Q6PGB8 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Smarca1Q6PGB8 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC25■■□□□ 1.59
Smarca1Q6PGB8 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC25■■□□□ 1.59
Smarca1Q6PGB8 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Smarca1Q6PGB8 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Smarca1Q6PGB8 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Smarca1Q6PGB8 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.99■■□□□ 1.59
Smarca1Q6PGB8 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Smarca1Q6PGB8 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Smarca1Q6PGB8 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Smarca1Q6PGB8 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC24.99■■□□□ 1.59
Smarca1Q6PGB8 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Smarca1Q6PGB8 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC24.98■■□□□ 1.59
Smarca1Q6PGB8 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC24.98■■□□□ 1.59
Smarca1Q6PGB8 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC24.98■■□□□ 1.59
Smarca1Q6PGB8 H3f3aos-201ENSMUST00000097448 2905 ntBASIC24.98■■□□□ 1.59
Smarca1Q6PGB8 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Smarca1Q6PGB8 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
Smarca1Q6PGB8 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Smarca1Q6PGB8 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC24.97■■□□□ 1.59
Smarca1Q6PGB8 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Smarca1Q6PGB8 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Smarca1Q6PGB8 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Smarca1Q6PGB8 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC24.96■■□□□ 1.59
Smarca1Q6PGB8 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Smarca1Q6PGB8 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Smarca1Q6PGB8 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Smarca1Q6PGB8 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Smarca1Q6PGB8 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC24.95■■□□□ 1.58
Smarca1Q6PGB8 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Smarca1Q6PGB8 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Smarca1Q6PGB8 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
Smarca1Q6PGB8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
Smarca1Q6PGB8 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Smarca1Q6PGB8 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Smarca1Q6PGB8 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Smarca1Q6PGB8 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Smarca1Q6PGB8 Gm9910-201ENSMUST00000195385 1550 ntBASIC24.93■■□□□ 1.58
Smarca1Q6PGB8 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Smarca1Q6PGB8 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
Smarca1Q6PGB8 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Smarca1Q6PGB8 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Smarca1Q6PGB8 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Smarca1Q6PGB8 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Smarca1Q6PGB8 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Smarca1Q6PGB8 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Smarca1Q6PGB8 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
Smarca1Q6PGB8 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Smarca1Q6PGB8 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Smarca1Q6PGB8 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Smarca1Q6PGB8 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC24.89■■□□□ 1.58
Smarca1Q6PGB8 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Smarca1Q6PGB8 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
Smarca1Q6PGB8 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Smarca1Q6PGB8 Terc-201ENSMUST00000082862 423 ntBASIC24.89■■□□□ 1.58
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms