Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Shmt1P50431 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Shmt1P50431 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Shmt1P50431 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.95■■□□□ 1.42
Shmt1P50431 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
Shmt1P50431 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
Shmt1P50431 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Shmt1P50431 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Shmt1P50431 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Shmt1P50431 AC164433.2-201ENSMUST00000226346 1701 ntBASIC23.9■■□□□ 1.42
Shmt1P50431 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Shmt1P50431 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Shmt1P50431 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Shmt1P50431 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC23.9■■□□□ 1.42
Shmt1P50431 Gm14523-201ENSMUST00000117260 558 ntBASIC23.89■■□□□ 1.41
Shmt1P50431 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Shmt1P50431 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Shmt1P50431 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Shmt1P50431 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Shmt1P50431 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Shmt1P50431 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Shmt1P50431 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC23.87■■□□□ 1.41
Shmt1P50431 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Shmt1P50431 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Shmt1P50431 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Shmt1P50431 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC23.86■■□□□ 1.41
Shmt1P50431 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC23.85■■□□□ 1.41
Shmt1P50431 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.85■■□□□ 1.41
Shmt1P50431 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Shmt1P50431 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.84■■□□□ 1.41
Shmt1P50431 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC23.84■■□□□ 1.41
Shmt1P50431 Gm44428-201ENSMUST00000204474 874 ntBASIC23.84■■□□□ 1.41
Shmt1P50431 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Shmt1P50431 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Shmt1P50431 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Shmt1P50431 Gm7332-201ENSMUST00000118351 454 ntBASIC23.83■■□□□ 1.41
Shmt1P50431 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Shmt1P50431 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Shmt1P50431 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
Shmt1P50431 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shmt1P50431 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shmt1P50431 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Shmt1P50431 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shmt1P50431 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.81■■□□□ 1.4
Shmt1P50431 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.8■■□□□ 1.4
Shmt1P50431 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Shmt1P50431 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC23.79■■□□□ 1.4
Shmt1P50431 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Shmt1P50431 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC23.79■■□□□ 1.4
Shmt1P50431 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC23.78■■□□□ 1.4
Shmt1P50431 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.78■■□□□ 1.4
Shmt1P50431 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.78■■□□□ 1.4
Shmt1P50431 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC23.78■■□□□ 1.4
Shmt1P50431 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
Shmt1P50431 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Gm42699-201ENSMUST00000198104 1657 ntBASIC23.76■■□□□ 1.39
Shmt1P50431 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms