Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Shmt1P50431 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Shmt1P50431 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Shmt1P50431 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Shmt1P50431 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.95■■□□□ 1.42
Shmt1P50431 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Shmt1P50431 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
Shmt1P50431 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Shmt1P50431 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Shmt1P50431 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
Shmt1P50431 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Shmt1P50431 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Shmt1P50431 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Shmt1P50431 AC164433.2-201ENSMUST00000226346 1701 ntBASIC23.9■■□□□ 1.42
Shmt1P50431 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Shmt1P50431 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Shmt1P50431 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Shmt1P50431 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC23.9■■□□□ 1.42
Shmt1P50431 Gm14523-201ENSMUST00000117260 558 ntBASIC23.89■■□□□ 1.41
Shmt1P50431 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Shmt1P50431 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Shmt1P50431 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Shmt1P50431 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Shmt1P50431 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Shmt1P50431 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Shmt1P50431 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC23.87■■□□□ 1.41
Shmt1P50431 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Shmt1P50431 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Shmt1P50431 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Shmt1P50431 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC23.86■■□□□ 1.41
Shmt1P50431 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC23.85■■□□□ 1.41
Shmt1P50431 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.85■■□□□ 1.41
Shmt1P50431 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shmt1P50431 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Shmt1P50431 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.84■■□□□ 1.41
Shmt1P50431 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC23.84■■□□□ 1.41
Shmt1P50431 Gm44428-201ENSMUST00000204474 874 ntBASIC23.84■■□□□ 1.41
Shmt1P50431 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Shmt1P50431 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Shmt1P50431 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Shmt1P50431 Gm7332-201ENSMUST00000118351 454 ntBASIC23.83■■□□□ 1.41
Shmt1P50431 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Shmt1P50431 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Shmt1P50431 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
Shmt1P50431 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shmt1P50431 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shmt1P50431 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Shmt1P50431 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shmt1P50431 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.81■■□□□ 1.4
Shmt1P50431 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shmt1P50431 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.8■■□□□ 1.4
Shmt1P50431 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Shmt1P50431 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shmt1P50431 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC23.79■■□□□ 1.4
Shmt1P50431 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Shmt1P50431 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC23.79■■□□□ 1.4
Shmt1P50431 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Shmt1P50431 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC23.78■■□□□ 1.4
Shmt1P50431 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.78■■□□□ 1.4
Shmt1P50431 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.78■■□□□ 1.4
Shmt1P50431 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC23.78■■□□□ 1.4
Shmt1P50431 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
Shmt1P50431 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Shmt1P50431 Gm42699-201ENSMUST00000198104 1657 ntBASIC23.76■■□□□ 1.39
Shmt1P50431 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 10.5 ms