Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msx1P13297 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msx1P13297 Gm10420-201ENSMUST00000121713 882 ntBASIC21.26■□□□□ 0.99
Msx1P13297 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msx1P13297 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msx1P13297 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.26■□□□□ 0.99
Msx1P13297 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Msx1P13297 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC21.25■□□□□ 0.99
Msx1P13297 Gm5921-201ENSMUST00000075898 882 ntBASIC21.25■□□□□ 0.99
Msx1P13297 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Msx1P13297 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msx1P13297 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msx1P13297 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msx1P13297 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msx1P13297 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msx1P13297 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.24■□□□□ 0.99
Msx1P13297 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msx1P13297 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Msx1P13297 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msx1P13297 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msx1P13297 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.23■□□□□ 0.99
Msx1P13297 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Msx1P13297 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msx1P13297 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Msx1P13297 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Gm4419-202ENSMUST00000226239 1431 ntBASIC21.22■□□□□ 0.99
Msx1P13297 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Msx1P13297 Gm9812-201ENSMUST00000061934 968 ntBASIC21.22■□□□□ 0.99
Msx1P13297 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Msx1P13297 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msx1P13297 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msx1P13297 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.21■□□□□ 0.99
Msx1P13297 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.21■□□□□ 0.99
Msx1P13297 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msx1P13297 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msx1P13297 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.21■□□□□ 0.99
Msx1P13297 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Msx1P13297 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Msx1P13297 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msx1P13297 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Msx1P13297 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.19■□□□□ 0.98
Msx1P13297 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msx1P13297 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msx1P13297 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msx1P13297 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msx1P13297 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Msx1P13297 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Msx1P13297 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.18■□□□□ 0.98
Msx1P13297 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.18■□□□□ 0.98
Msx1P13297 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msx1P13297 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Msx1P13297 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msx1P13297 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC21.17■□□□□ 0.98
Msx1P13297 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msx1P13297 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msx1P13297 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Msx1P13297 Gm15546-201ENSMUST00000122095 826 ntBASIC21.15■□□□□ 0.98
Msx1P13297 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.15■□□□□ 0.98
Msx1P13297 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Msx1P13297 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msx1P13297 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Msx1P13297 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Msx1P13297 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Msx1P13297 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.13■□□□□ 0.97
Msx1P13297 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msx1P13297 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC21.13■□□□□ 0.97
Msx1P13297 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.13■□□□□ 0.97
Msx1P13297 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Msx1P13297 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.13■□□□□ 0.97
Msx1P13297 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msx1P13297 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msx1P13297 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msx1P13297 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msx1P13297 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msx1P13297 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msx1P13297 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Msx1P13297 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Msx1P13297 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msx1P13297 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msx1P13297 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Msx1P13297 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msx1P13297 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msx1P13297 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msx1P13297 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Msx1P13297 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msx1P13297 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Msx1P13297 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msx1P13297 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msx1P13297 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msx1P13297 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Msx1P13297 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Msx1P13297 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msx1P13297 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms