Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Prom1O54990 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Prom1O54990 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Prom1O54990 Fezf2-202ENSMUST00000224023 1917 ntBASIC25.26■■□□□ 1.63
Prom1O54990 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
Prom1O54990 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC25.25■■□□□ 1.63
Prom1O54990 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Prom1O54990 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Prom1O54990 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
Prom1O54990 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
Prom1O54990 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
Prom1O54990 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Prom1O54990 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
Prom1O54990 Gm15546-201ENSMUST00000122095 826 ntBASIC25.23■■□□□ 1.63
Prom1O54990 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Prom1O54990 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
Prom1O54990 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Prom1O54990 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC25.21■■□□□ 1.63
Prom1O54990 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Prom1O54990 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.63
Prom1O54990 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
Prom1O54990 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
Prom1O54990 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Prom1O54990 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
Prom1O54990 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Prom1O54990 Gm5522-201ENSMUST00000189483 1242 ntBASIC25.2■■□□□ 1.62
Prom1O54990 Gm43592-201ENSMUST00000196922 1165 ntBASIC25.2■■□□□ 1.62
Prom1O54990 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC25.2■■□□□ 1.62
Prom1O54990 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Prom1O54990 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Prom1O54990 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Prom1O54990 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Prom1O54990 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Prom1O54990 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Prom1O54990 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC25.18■■□□□ 1.62
Prom1O54990 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Prom1O54990 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Prom1O54990 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Prom1O54990 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Prom1O54990 AC122428.3-201ENSMUST00000215551 2290 ntBASIC25.16■■□□□ 1.62
Prom1O54990 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Prom1O54990 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Prom1O54990 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
Prom1O54990 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC25.15■■□□□ 1.62
Prom1O54990 Nsd1-203ENSMUST00000224156 1149 ntBASIC25.15■■□□□ 1.62
Prom1O54990 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Prom1O54990 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Prom1O54990 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Prom1O54990 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC25.13■■□□□ 1.61
Prom1O54990 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Prom1O54990 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Prom1O54990 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC25.12■■□□□ 1.61
Prom1O54990 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
Prom1O54990 AC117769.4-201ENSMUST00000225679 685 ntBASIC25.11■■□□□ 1.61
Prom1O54990 AC093043.1-201ENSMUST00000226700 898 ntBASIC25.11■■□□□ 1.61
Prom1O54990 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC25.11■■□□□ 1.61
Prom1O54990 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
Prom1O54990 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC25.09■■□□□ 1.61
Prom1O54990 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC25.09■■□□□ 1.61
Prom1O54990 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Prom1O54990 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Prom1O54990 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Prom1O54990 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Prom1O54990 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Prom1O54990 Gm15820-201ENSMUST00000201566 728 ntBASIC25.08■■□□□ 1.61
Prom1O54990 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
Prom1O54990 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.6
Prom1O54990 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC25.07■■□□□ 1.6
Prom1O54990 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Prom1O54990 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Prom1O54990 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC25.07■■□□□ 1.6
Prom1O54990 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Prom1O54990 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Prom1O54990 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC25.06■■□□□ 1.6
Prom1O54990 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC25.06■■□□□ 1.6
Prom1O54990 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Prom1O54990 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Prom1O54990 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Prom1O54990 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Prom1O54990 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Prom1O54990 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
Prom1O54990 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Prom1O54990 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Prom1O54990 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Prom1O54990 Gm43566-201ENSMUST00000196851 808 ntBASIC25.03■■□□□ 1.6
Prom1O54990 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC25.03■■□□□ 1.6
Prom1O54990 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Prom1O54990 AC164433.2-201ENSMUST00000226346 1701 ntBASIC25.03■■□□□ 1.6
Prom1O54990 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
Prom1O54990 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Prom1O54990 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Prom1O54990 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Prom1O54990 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC25.02■■□□□ 1.6
Prom1O54990 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Prom1O54990 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
Prom1O54990 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
Prom1O54990 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
Prom1O54990 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Prom1O54990 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Prom1O54990 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms