Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tnfsf11O35235 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tnfsf11O35235 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tnfsf11O35235 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Tnfsf11O35235 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tnfsf11O35235 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC17.54■□□□□ 0.4
Tnfsf11O35235 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Tnfsf11O35235 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tnfsf11O35235 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tnfsf11O35235 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
Tnfsf11O35235 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tnfsf11O35235 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tnfsf11O35235 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tnfsf11O35235 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Tnfsf11O35235 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tnfsf11O35235 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC17.53■□□□□ 0.4
Tnfsf11O35235 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Tnfsf11O35235 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tnfsf11O35235 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tnfsf11O35235 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tnfsf11O35235 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.52■□□□□ 0.4
Tnfsf11O35235 Gm30023-201ENSMUST00000197970 889 ntBASIC17.52■□□□□ 0.4
Tnfsf11O35235 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tnfsf11O35235 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tnfsf11O35235 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Tnfsf11O35235 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Tnfsf11O35235 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
Tnfsf11O35235 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Tnfsf11O35235 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Tnfsf11O35235 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Tnfsf11O35235 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Tnfsf11O35235 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Tnfsf11O35235 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Tnfsf11O35235 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Tnfsf11O35235 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Tnfsf11O35235 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Tnfsf11O35235 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC17.5■□□□□ 0.39
Tnfsf11O35235 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Tnfsf11O35235 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.5■□□□□ 0.39
Tnfsf11O35235 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Tnfsf11O35235 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC17.5■□□□□ 0.39
Tnfsf11O35235 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Tnfsf11O35235 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Tnfsf11O35235 Gm6934-201ENSMUST00000194780 1905 ntBASIC17.49■□□□□ 0.39
Tnfsf11O35235 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Tnfsf11O35235 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Tnfsf11O35235 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Tnfsf11O35235 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Tnfsf11O35235 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Tnfsf11O35235 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.48■□□□□ 0.39
Tnfsf11O35235 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.48■□□□□ 0.39
Tnfsf11O35235 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Tnfsf11O35235 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Tnfsf11O35235 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC17.47■□□□□ 0.39
Tnfsf11O35235 Zfp131-205ENSMUST00000223812 663 ntBASIC17.47■□□□□ 0.39
Tnfsf11O35235 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Tnfsf11O35235 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Tnfsf11O35235 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Tnfsf11O35235 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Tnfsf11O35235 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Tnfsf11O35235 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC17.46■□□□□ 0.39
Tnfsf11O35235 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Tnfsf11O35235 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
Tnfsf11O35235 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Tnfsf11O35235 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Tnfsf11O35235 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
Tnfsf11O35235 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Tnfsf11O35235 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Tnfsf11O35235 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Tnfsf11O35235 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Tnfsf11O35235 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.44■□□□□ 0.38
Tnfsf11O35235 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Tnfsf11O35235 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Tnfsf11O35235 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Tnfsf11O35235 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC17.43■□□□□ 0.38
Tnfsf11O35235 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Tnfsf11O35235 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Tnfsf11O35235 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.43■□□□□ 0.38
Tnfsf11O35235 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Tnfsf11O35235 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Tnfsf11O35235 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Tnfsf11O35235 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Tnfsf11O35235 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Tnfsf11O35235 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Tnfsf11O35235 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Tnfsf11O35235 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Tnfsf11O35235 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.42■□□□□ 0.38
Tnfsf11O35235 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Tnfsf11O35235 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Tnfsf11O35235 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Tnfsf11O35235 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Tnfsf11O35235 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Tnfsf11O35235 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Tnfsf11O35235 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Tnfsf11O35235 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Tnfsf11O35235 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Tnfsf11O35235 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Tnfsf11O35235 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Tnfsf11O35235 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Tnfsf11O35235 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 10.1 ms