Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Scn2aA0A0J9YTW6 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn2aA0A0J9YTW6 Gm27502-201ENSMUST00000183495 199 ntBASIC20.75■□□□□ 0.91
Scn2aA0A0J9YTW6 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Scn2aA0A0J9YTW6 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn2aA0A0J9YTW6 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn2aA0A0J9YTW6 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.74■□□□□ 0.91
Scn2aA0A0J9YTW6 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.74■□□□□ 0.91
Scn2aA0A0J9YTW6 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Scn2aA0A0J9YTW6 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn2aA0A0J9YTW6 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn2aA0A0J9YTW6 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn2aA0A0J9YTW6 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scn2aA0A0J9YTW6 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scn2aA0A0J9YTW6 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.73■□□□□ 0.91
Scn2aA0A0J9YTW6 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn2aA0A0J9YTW6 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.72■□□□□ 0.91
Scn2aA0A0J9YTW6 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn2aA0A0J9YTW6 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn2aA0A0J9YTW6 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn2aA0A0J9YTW6 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
Scn2aA0A0J9YTW6 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn2aA0A0J9YTW6 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.7■□□□□ 0.9
Scn2aA0A0J9YTW6 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn2aA0A0J9YTW6 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn2aA0A0J9YTW6 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn2aA0A0J9YTW6 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn2aA0A0J9YTW6 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn2aA0A0J9YTW6 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scn2aA0A0J9YTW6 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn2aA0A0J9YTW6 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn2aA0A0J9YTW6 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn2aA0A0J9YTW6 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn2aA0A0J9YTW6 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn2aA0A0J9YTW6 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.68■□□□□ 0.9
Scn2aA0A0J9YTW6 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn2aA0A0J9YTW6 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn2aA0A0J9YTW6 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn2aA0A0J9YTW6 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn2aA0A0J9YTW6 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Gm44428-201ENSMUST00000204474 874 ntBASIC20.65■□□□□ 0.9
Scn2aA0A0J9YTW6 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn2aA0A0J9YTW6 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.64■□□□□ 0.89
Scn2aA0A0J9YTW6 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Scn2aA0A0J9YTW6 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.63■□□□□ 0.89
Scn2aA0A0J9YTW6 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn2aA0A0J9YTW6 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn2aA0A0J9YTW6 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn2aA0A0J9YTW6 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Scn2aA0A0J9YTW6 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Scn2aA0A0J9YTW6 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Scn2aA0A0J9YTW6 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Scn2aA0A0J9YTW6 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn2aA0A0J9YTW6 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Scn2aA0A0J9YTW6 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn2aA0A0J9YTW6 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Scn2aA0A0J9YTW6 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn2aA0A0J9YTW6 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn2aA0A0J9YTW6 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Scn2aA0A0J9YTW6 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Scn2aA0A0J9YTW6 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.6■□□□□ 0.89
Scn2aA0A0J9YTW6 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn2aA0A0J9YTW6 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.6■□□□□ 0.89
Scn2aA0A0J9YTW6 Gm14523-201ENSMUST00000117260 558 ntBASIC20.6■□□□□ 0.89
Scn2aA0A0J9YTW6 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scn2aA0A0J9YTW6 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn2aA0A0J9YTW6 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Gm10420-201ENSMUST00000121713 882 ntBASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Scn2aA0A0J9YTW6 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn2aA0A0J9YTW6 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 71 ms