Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Gm18889-201ENSMUST00000174284 929 ntBASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Gm43474-201ENSMUST00000196415 774 ntBASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 AC159114.1-201ENSMUST00000220349 266 ntBASIC16.44■□□□□ 0.22
Trim54Q9ERP3 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Trim54Q9ERP3 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Gm10154-201ENSMUST00000084445 354 ntBASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Trim54Q9ERP3 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Gm2272-201ENSMUST00000194903 582 ntBASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms