Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgn3Q9DCB1 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Gm5417-201ENSMUST00000079706 384 ntBASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.3□□□□□ -0.12
Hmgn3Q9DCB1 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgn3Q9DCB1 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Gm14722-201ENSMUST00000118943 689 ntBASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgn3Q9DCB1 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms