Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Gm6576-201ENSMUST00000169678 883 ntBASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ccdc9Q8VC31 Gm28182-201ENSMUST00000188354 2477 ntBASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc9Q8VC31 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.53
Ccdc9Q8VC31 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Gm42545-201ENSMUST00000202755 922 ntBASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Gm18244-201ENSMUST00000219747 1566 ntBASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Gm9856-201ENSMUST00000217077 2578 ntBASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc9Q8VC31 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Gm37292-201ENSMUST00000192062 758 ntBASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc9Q8VC31 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc9Q8VC31 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms