Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Col11a1Q61245 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Gm7067-201ENSMUST00000207698 1249 ntBASIC16.79■□□□□ 0.28
Col11a1Q61245 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col11a1Q61245 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.78■□□□□ 0.28
Col11a1Q61245 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.78■□□□□ 0.28
Col11a1Q61245 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col11a1Q61245 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC16.77■□□□□ 0.28
Col11a1Q61245 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC16.77■□□□□ 0.28
Col11a1Q61245 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col11a1Q61245 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Col11a1Q61245 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 Gm12341-201ENSMUST00000119724 503 ntBASIC16.77■□□□□ 0.27
Col11a1Q61245 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 Gm9002-201ENSMUST00000178437 499 ntBASIC16.77■□□□□ 0.27
Col11a1Q61245 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 AC155252.1-201ENSMUST00000226462 1208 ntBASIC16.77■□□□□ 0.27
Col11a1Q61245 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col11a1Q61245 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC16.77■□□□□ 0.27
Col11a1Q61245 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.77■□□□□ 0.27
Col11a1Q61245 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.76■□□□□ 0.27
Col11a1Q61245 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Gm37230-201ENSMUST00000194491 818 ntBASIC16.76■□□□□ 0.27
Col11a1Q61245 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC16.76■□□□□ 0.27
Col11a1Q61245 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC16.76■□□□□ 0.27
Col11a1Q61245 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Gm19220-201ENSMUST00000222682 803 ntBASIC16.76■□□□□ 0.27
Col11a1Q61245 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.76■□□□□ 0.27
Col11a1Q61245 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Col11a1Q61245 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col11a1Q61245 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.75■□□□□ 0.27
Col11a1Q61245 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC16.75■□□□□ 0.27
Col11a1Q61245 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 AC131068.2-201ENSMUST00000226175 1453 ntBASIC16.75■□□□□ 0.27
Col11a1Q61245 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col11a1Q61245 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC16.75■□□□□ 0.27
Col11a1Q61245 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col11a1Q61245 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.75■□□□□ 0.27
Col11a1Q61245 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
Col11a1Q61245 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms