Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC10.29□□□□□ -0.76
Trav3-1Q5R1I8 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Trav3-1Q5R1I8 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
Trav3-1Q5R1I8 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Trav3-1Q5R1I8 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Pck2-205ENSMUST00000226352 2784 ntBASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Trav3-1Q5R1I8 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.76
Trav3-1Q5R1I8 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Trav3-1Q5R1I8 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC10.27□□□□□ -0.76
Trav3-1Q5R1I8 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Trav3-1Q5R1I8 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
Trav3-1Q5R1I8 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Trav3-1Q5R1I8 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Gm42480-201ENSMUST00000198434 2595 ntBASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Trav3-1Q5R1I8 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Trav3-1Q5R1I8 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC10.26□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms