Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Ccdc88bQ4QRL3 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.51
Ccdc88bQ4QRL3 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Gm15487-201ENSMUST00000122373 465 ntBASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Gm8410-201ENSMUST00000117225 605 ntBASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ccdc88bQ4QRL3 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Gm6539-201ENSMUST00000119157 1064 ntBASIC24.5■■□□□ 1.51
Ccdc88bQ4QRL3 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Gm6756-201ENSMUST00000180647 1620 ntBASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ccdc88bQ4QRL3 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Gm9719-201ENSMUST00000162765 543 ntBASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Gm5866-201ENSMUST00000177881 973 ntBASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ccdc88bQ4QRL3 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm29310-201ENSMUST00000185468 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21825-201ENSMUST00000185728 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm29109-201ENSMUST00000185895 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21896-201ENSMUST00000186520 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21873-201ENSMUST00000186728 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21794-201ENSMUST00000187056 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21880-201ENSMUST00000187275 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21826-201ENSMUST00000187451 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21198-201ENSMUST00000188393 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21749-201ENSMUST00000189343 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21901-201ENSMUST00000189568 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm29424-201ENSMUST00000189716 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm28599-201ENSMUST00000189838 694 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21867-201ENSMUST00000189917 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm29269-201ENSMUST00000190087 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21722-201ENSMUST00000190153 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm28423-201ENSMUST00000190701 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21899-201ENSMUST00000190745 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21910-201ENSMUST00000191163 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21849-201ENSMUST00000191571 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm28678-201ENSMUST00000191593 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm20910-201ENSMUST00000193268 696 ntBASIC24.47■■□□□ 1.51
Ccdc88bQ4QRL3 Gm21871-201ENSMUST00000194621 696 ntBASIC24.47■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 83.7 ms