Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Gm44430-201ENSMUST00000203376 995 ntBASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Gm10052-201ENSMUST00000168019 960 ntBASIC14.29□□□□□ -0.12
Trim40Q3UWA4 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 AC134329.2-201ENSMUST00000217897 428 ntBASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Gm7729-201ENSMUST00000050143 801 ntBASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim40Q3UWA4 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Gm43799-201ENSMUST00000201845 579 ntBASIC14.28□□□□□ -0.12
Trim40Q3UWA4 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim40Q3UWA4 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim40Q3UWA4 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms