Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Gm44364-201ENSMUST00000198368 141 ntBASIC17.7■□□□□ 0.42
Rnf180Q3U827 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Rnf180Q3U827 CT573034.1-201ENSMUST00000222983 313 ntBASIC17.7■□□□□ 0.42
Rnf180Q3U827 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 AC166574.6-201ENSMUST00000227889 1806 ntBASIC17.7■□□□□ 0.42
Rnf180Q3U827 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC17.69■□□□□ 0.42
Rnf180Q3U827 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC17.69■□□□□ 0.42
Rnf180Q3U827 Gm5279-201ENSMUST00000199575 745 ntBASIC17.69■□□□□ 0.42
Rnf180Q3U827 Gm7287-201ENSMUST00000205267 602 ntBASIC17.69■□□□□ 0.42
Rnf180Q3U827 Gm40466-201ENSMUST00000212174 422 ntBASIC17.69■□□□□ 0.42
Rnf180Q3U827 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC17.69■□□□□ 0.42
Rnf180Q3U827 AC134335.2-201ENSMUST00000227660 440 ntBASIC17.69■□□□□ 0.42
Rnf180Q3U827 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Rnf180Q3U827 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Gm15393-201ENSMUST00000120499 219 ntBASIC17.68■□□□□ 0.42
Rnf180Q3U827 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rnf180Q3U827 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC17.67■□□□□ 0.42
Rnf180Q3U827 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Gm27341-201ENSMUST00000183570 106 ntBASIC17.67■□□□□ 0.42
Rnf180Q3U827 Gm27501-201ENSMUST00000183599 107 ntBASIC17.67■□□□□ 0.42
Rnf180Q3U827 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 AC155637.1-201ENSMUST00000218560 636 ntBASIC17.67■□□□□ 0.42
Rnf180Q3U827 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rnf180Q3U827 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Gm2495-201ENSMUST00000191160 466 ntBASIC17.66■□□□□ 0.42
Rnf180Q3U827 AU022133-201ENSMUST00000200601 873 ntBASIC17.66■□□□□ 0.42
Rnf180Q3U827 Gm8463-201ENSMUST00000208573 613 ntBASIC17.66■□□□□ 0.42
Rnf180Q3U827 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rnf180Q3U827 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms