Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 AC130669.1-201ENSMUST00000228537 1672 ntBASIC13.12□□□□□ -0.31
Nkx3-1P97436 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 CT025555.1-201ENSMUST00000225901 1217 ntBASIC13.12□□□□□ -0.31
Nkx3-1P97436 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nkx3-1P97436 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Gm18057-201ENSMUST00000208220 503 ntBASIC13.11□□□□□ -0.31
Nkx3-1P97436 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 AC124732.2-201ENSMUST00000221977 316 ntBASIC13.11□□□□□ -0.31
Nkx3-1P97436 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.11□□□□□ -0.31
Nkx3-1P97436 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.11□□□□□ -0.31
Nkx3-1P97436 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nkx3-1P97436 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Mir449b-201ENSMUST00000104833 80 ntBASIC13.1□□□□□ -0.31
Nkx3-1P97436 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms