Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 AC084391.1-201ENSMUST00000200651 141 ntBASIC18.06■□□□□ 0.48
Ercc3P49135 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC18.06■□□□□ 0.48
Ercc3P49135 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC18.06■□□□□ 0.48
Ercc3P49135 AC131709.1-201ENSMUST00000224731 1180 ntBASIC18.06■□□□□ 0.48
Ercc3P49135 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ercc3P49135 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
Ercc3P49135 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ercc3P49135 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ercc3P49135 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ercc3P49135 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ercc3P49135 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ercc3P49135 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ercc3P49135 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ercc3P49135 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Ercc3P49135 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Ercc3P49135 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm11453-201ENSMUST00000117318 1007 ntBASIC18.05■□□□□ 0.48
Ercc3P49135 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC18.05■□□□□ 0.48
Ercc3P49135 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
Ercc3P49135 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC18.05■□□□□ 0.48
Ercc3P49135 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.05■□□□□ 0.48
Ercc3P49135 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ercc3P49135 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Gm11779-201ENSMUST00000118541 368 ntBASIC18.04■□□□□ 0.48
Ercc3P49135 Gm14722-201ENSMUST00000118943 689 ntBASIC18.04■□□□□ 0.48
Ercc3P49135 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.04■□□□□ 0.48
Ercc3P49135 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC18.04■□□□□ 0.48
Ercc3P49135 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ercc3P49135 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
Ercc3P49135 Gm43352-201ENSMUST00000196419 3065 ntBASIC18.03■□□□□ 0.48
Ercc3P49135 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
Ercc3P49135 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Ercc3P49135 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.03■□□□□ 0.48
Ercc3P49135 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
Ercc3P49135 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.03■□□□□ 0.48
Ercc3P49135 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 AC154412.1-201ENSMUST00000226540 2786 ntBASIC18.03■□□□□ 0.48
Ercc3P49135 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ercc3P49135 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Ercc3P49135 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC18.03■□□□□ 0.48
Ercc3P49135 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ercc3P49135 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.02■□□□□ 0.48
Ercc3P49135 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ercc3P49135 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ercc3P49135 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.48
Ercc3P49135 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ercc3P49135 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ercc3P49135 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.02■□□□□ 0.48
Ercc3P49135 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC18.02■□□□□ 0.48
Ercc3P49135 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Ercc3P49135 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Ercc3P49135 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.02■□□□□ 0.48
Ercc3P49135 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.02■□□□□ 0.48
Ercc3P49135 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ercc3P49135 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms