Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Rfx1P48377 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC18.21■□□□□ 0.5
Rfx1P48377 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Rfx1P48377 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Rfx1P48377 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Rfx1P48377 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Rfx1P48377 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Rfx1P48377 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Rfx1P48377 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.2■□□□□ 0.5
Rfx1P48377 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.2■□□□□ 0.5
Rfx1P48377 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Rfx1P48377 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx1P48377 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC18.2■□□□□ 0.5
Rfx1P48377 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Rfx1P48377 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC18.2■□□□□ 0.5
Rfx1P48377 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC18.19■□□□□ 0.5
Rfx1P48377 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
Rfx1P48377 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Rfx1P48377 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Rfx1P48377 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Rfx1P48377 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Rfx1P48377 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Rfx1P48377 Mir6982-201ENSMUST00000184354 68 ntBASIC18.19■□□□□ 0.5
Rfx1P48377 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC18.19■□□□□ 0.5
Rfx1P48377 Gm5587-201ENSMUST00000206270 674 ntBASIC18.19■□□□□ 0.5
Rfx1P48377 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
Rfx1P48377 Sorbs3-204ENSMUST00000227929 2460 ntBASIC18.19■□□□□ 0.5
Rfx1P48377 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Rfx1P48377 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Rfx1P48377 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx1P48377 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC18.18■□□□□ 0.5
Rfx1P48377 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
Rfx1P48377 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Gm15794-201ENSMUST00000120182 631 ntBASIC18.18■□□□□ 0.5
Rfx1P48377 Gm30437-201ENSMUST00000206086 1201 ntBASIC18.18■□□□□ 0.5
Rfx1P48377 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.18■□□□□ 0.5
Rfx1P48377 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx1P48377 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Rfx1P48377 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Rfx1P48377 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Rfx1P48377 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.17■□□□□ 0.5
Rfx1P48377 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms