Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Trav4d-2-201ENSMUST00000120914 335 ntBASIC19.92■□□□□ 0.78
Col18a1P39061 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC19.92■□□□□ 0.78
Col18a1P39061 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Col18a1P39061 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC19.91■□□□□ 0.78
Col18a1P39061 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Col18a1P39061 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Gm4959-201ENSMUST00000197271 1044 ntBASIC19.91■□□□□ 0.78
Col18a1P39061 CT009713.10-202ENSMUST00000225734 696 ntBASIC19.91■□□□□ 0.78
Col18a1P39061 AC122459.1-201ENSMUST00000228373 885 ntBASIC19.91■□□□□ 0.78
Col18a1P39061 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC19.91■□□□□ 0.78
Col18a1P39061 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC19.91■□□□□ 0.78
Col18a1P39061 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col18a1P39061 Gm15460-201ENSMUST00000118147 391 ntBASIC19.9■□□□□ 0.78
Col18a1P39061 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Col18a1P39061 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Col18a1P39061 Gm18307-201ENSMUST00000206864 949 ntBASIC19.9■□□□□ 0.78
Col18a1P39061 Gm17794-201ENSMUST00000220252 955 ntBASIC19.9■□□□□ 0.78
Col18a1P39061 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Col18a1P39061 Olfr582-201ENSMUST00000098212 960 ntBASIC19.9■□□□□ 0.78
Col18a1P39061 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
Col18a1P39061 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Col18a1P39061 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC19.9■□□□□ 0.78
Col18a1P39061 Gm7172-201ENSMUST00000218047 1152 ntBASIC19.9■□□□□ 0.78
Col18a1P39061 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
Col18a1P39061 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col18a1P39061 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Col18a1P39061 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col18a1P39061 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
Col18a1P39061 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC19.89■□□□□ 0.78
Col18a1P39061 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col18a1P39061 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col18a1P39061 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC19.89■□□□□ 0.77
Col18a1P39061 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC19.89■□□□□ 0.77
Col18a1P39061 Gm27731-201ENSMUST00000185192 107 ntBASIC19.89■□□□□ 0.77
Col18a1P39061 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC19.89■□□□□ 0.77
Col18a1P39061 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Col18a1P39061 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col18a1P39061 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC19.88■□□□□ 0.77
Col18a1P39061 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC19.88■□□□□ 0.77
Col18a1P39061 Mir3102-201ENSMUST00000175555 104 ntBASIC19.88■□□□□ 0.77
Col18a1P39061 AC153872.1-201ENSMUST00000199539 128 ntBASIC19.88■□□□□ 0.77
Col18a1P39061 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col18a1P39061 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
Col18a1P39061 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC19.87■□□□□ 0.77
Col18a1P39061 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col18a1P39061 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Col18a1P39061 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col18a1P39061 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col18a1P39061 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col18a1P39061 Gm12329-201ENSMUST00000120829 1007 ntBASIC19.87■□□□□ 0.77
Col18a1P39061 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC19.87■□□□□ 0.77
Col18a1P39061 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col18a1P39061 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Col18a1P39061 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC19.87■□□□□ 0.77
Col18a1P39061 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms