Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdx1P18111 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC12.32□□□□□ -0.44
Cdx1P18111 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC12.32□□□□□ -0.44
Cdx1P18111 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdx1P18111 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Cdx1P18111 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Gm18669-201ENSMUST00000216049 778 ntBASIC12.32□□□□□ -0.44
Cdx1P18111 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Cdx1P18111 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 AC153366.2-201ENSMUST00000219461 1984 ntBASIC12.32□□□□□ -0.44
Cdx1P18111 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Cdx1P18111 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cdx1P18111 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
Cdx1P18111 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Cdx1P18111 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC12.31□□□□□ -0.44
Cdx1P18111 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Cdx1P18111 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Cdx1P18111 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC12.31□□□□□ -0.44
Cdx1P18111 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Cdx1P18111 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Gm11950-201ENSMUST00000121615 838 ntBASIC12.31□□□□□ -0.44
Cdx1P18111 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC12.31□□□□□ -0.44
Cdx1P18111 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC12.31□□□□□ -0.44
Cdx1P18111 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.31□□□□□ -0.44
Cdx1P18111 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Cdx1P18111 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC12.31□□□□□ -0.44
Cdx1P18111 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC12.31□□□□□ -0.44
Cdx1P18111 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Cdx1P18111 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Cdx1P18111 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC12.3□□□□□ -0.44
Cdx1P18111 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Efs-202ENSMUST00000227037 2540 ntBASIC12.3□□□□□ -0.44
Cdx1P18111 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC12.3□□□□□ -0.44
Cdx1P18111 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC12.3□□□□□ -0.44
Cdx1P18111 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC12.3□□□□□ -0.44
Cdx1P18111 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC12.3□□□□□ -0.44
Cdx1P18111 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Cdx1P18111 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC12.3□□□□□ -0.44
Cdx1P18111 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Cdx1P18111 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Rubie-203ENSMUST00000227803 2430 ntBASIC12.3□□□□□ -0.44
Cdx1P18111 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Cdx1P18111 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC12.3□□□□□ -0.44
Cdx1P18111 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Cdx1P18111 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Cdx1P18111 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Cdx1P18111 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms