Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 AC153794.1-201ENSMUST00000169148 126 ntBASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Gm6728-201ENSMUST00000178117 1065 ntBASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Gm43697-201ENSMUST00000199637 2581 ntBASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Pcdh1F7BJK1 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Gm38318-201ENSMUST00000195769 1706 ntBASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Gm45328-201ENSMUST00000210942 917 ntBASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Gm9172-201ENSMUST00000212092 954 ntBASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Pcdh1F7BJK1 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Gm8258-201ENSMUST00000055593 1449 ntBASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Pcdh1F7BJK1 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Gm11950-201ENSMUST00000121615 838 ntBASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Gm19164-201ENSMUST00000210667 640 ntBASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 AC127349.1-201ENSMUST00000224590 266 ntBASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Vti1a-206ENSMUST00000225529 1244 ntBASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Pcdh1F7BJK1 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC13.69□□□□□ -0.22
Pcdh1F7BJK1 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms