Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Mir6404-201ENSMUST00000183699 94 ntBASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim39Q9ESN2 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 App-207ENSMUST00000227737 2827 ntBASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim39Q9ESN2 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim39Q9ESN2 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim39Q9ESN2 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim39Q9ESN2 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms