Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.47■□□□□ 0.23
Trim54Q9ERP3 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Gm13616-201ENSMUST00000120600 222 ntBASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim54Q9ERP3 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC16.46■□□□□ 0.23
Trim54Q9ERP3 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Mir6990-201ENSMUST00000183724 91 ntBASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Gm44872-201ENSMUST00000207864 420 ntBASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim54Q9ERP3 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trim54Q9ERP3 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
Trim54Q9ERP3 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trim54Q9ERP3 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trim54Q9ERP3 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Rprl2-201ENSMUST00000157150 290 ntBASIC16.45■□□□□ 0.22
Trim54Q9ERP3 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms